2 Workflow

2.1 Info

In the following, I give an overview over the individual steps done in during de novo assembly of the barred hamlet (Hypoplectrus puella) genome.

Within the scheme, each arrow represents a script (or class of scripts) connecting individual steps of the assembly/ analysis.

The respective scripts are store in the folders $WORK/1_assembly_scripts & $WORK/2_reSeq-scripts.

For the final visualization (the green squares in panel 2.2.Popgen), additional documentation is provided in the following pages.