Let there be Open Data

I am convinced that science should be open and thus I try to make data and code as accessible as possible. Below, are the accession numbers and links to the public repositories of the data sets I have worked on in the past, organized by repository type.

ENA

Several raw sequencing data sets that I have worked one are deposited at the European Nucleotide Archive (ENA). These include:

• Project PRJEB27858 (): DNA and RNA sequencing libraries used for the assembly of the hamlet reference genome, whole genome resequencing data (110 hamlet samples, 3 species x 3 locations) and RNA sequencing of hamlet retina samples.

• Project PRJEB29705 (): whole genome resequencing data (15 hamlet samples: 10 x H. maya from Belize and 5 x H. gemma from Florida).

• Project PRJEB35459 (): whole genome resequencing data (47 hamlet and 3 Serranus samples).

Dryad

Many intermediate results of studies listed in the Science section are deposited on Dryad:

• Data from Hench et al 2019 (, doi: 10.5061/dryad.pg8q56g)
  • Hamlet genome annotation (gff file)
  • Phased genotypes (vcf file)
  • F_ST and GxP results
• Data from Moran et al 2019 (, doi: 10.5061/dryad.hp388dm)
  • Phased and unphased genotypes (vcf file)
• Data from Hench et al 2022 (, doi: 10.5061/dryad.280gb5mmt)
  • Phased genotypes (vcf file)
  • Hamlet phenotype data (tsv file)
  • several population genomic results