hypo_annotation_baseplot initializes the annotation plot.
hypo_annotation_baseplot( ..., searchLG, xrange, genes_of_interest = c(), genes_of_sec_interest = c(), anno_rown = 3, width = 0.1 )
| ... | catch all parameter to allow excessive parameters through purrr::pmap |
|---|---|
| searchLG | string scalar (mandatory), should be on of "LG01" - "LG24" |
| xrange | integer vector (mandatory), data range to be loaded(start bp - end bp). Positions are defined with respect to the LG, NOT the overall genomic position. |
| genes_of_interest | string vector (optional), tags specific gene names for highlighting when plotting. (needs to exactly match the gene name of the original gff file) |
| genes_of_sec_interest | string vector (optional), tags specific gene names for secondary highlighting when plotting. (needs to exactly match the gene name of the original gff file) |
| anno_rown | integer scalar (optional), defines the number of gene rows to avoid overlapping. |
| width | float scalar (0-1, optional), defines the height of the exon boxes. |
This is wrapper that includes loading the annotations, and initializing the ggplot. Individual data tracks should be realized using faceting over the "window" column.