prep_data imports the twisst data of a selected LG
prep_data(loc, window_size = twisst_size, ...)
| loc | sample location (bel [Belize]/ hon [Honduras]/ pan [Panama]) |
|---|---|
| window_size | size of twisst windows (bp) |
| ... | catch-all parameter for purrr::pmap to ignore excessive parameters |
Based on the focal outlier names, the linkage group is determined. The topology weighting results and positions files are located and filtered for the focal LG and location.
Then, the selected files are imported.
Other Figure 5:
ax_scl(),
cross_spec(),
custom_annoplot(),
dist_tibble(),
distances_tree(),
get_clr(),
get_dist(),
get_gxp_long(),
get_isolated_topos(),
get_neighbour_topos(),
is_isolated(),
min_dist(),
no_title(),
plot_curtain(),
plot_fish_zoom(),
plot_fst_poptree(),
plot_leg(),
plot_panel_anno(),
plot_panel_delta_dxy(),
plot_panel_dxy(),
plot_panel_fst(),
plot_panel_gxp(),
plot_panel_twisst(),
theme_panels()