custom_annoplot extracts and plots hypoplectrus annotation data
custom_annoplot( ..., searchLG, xrange, genes_of_interest = c(), genes_of_sec_interest = c(), anno_rown = 3, width = 0.1, gene_color = "darkgray", start, end )
| ... | catch-all parameter to allow excessive parameters through purrr::pmap |
|---|---|
| searchLG | string, linkage group (eg. "LG08") |
| xrange | numeric vector of length 2, range of the plotted window |
| genes_of_interest | vector of strings, genes that receive a label |
| genes_of_sec_interest | vector of strings (deprecate/legacy) |
| anno_rown | numeric, number of rows used for gene annotation |
| width | numeric, width of genes |
| gene_color | string (color), highlight color for genes |
| start | numeric, start position of window (bp) |
| end | numeric, end position of window (bp) |
This is a modification of hypogen::hypo_annotation_baseplot(). The highlighting of the outlier area is added and the coloration of genes is simplified to ony a single color.
Other Figure 5:
ax_scl(),
cross_spec(),
dist_tibble(),
distances_tree(),
get_clr(),
get_dist(),
get_gxp_long(),
get_isolated_topos(),
get_neighbour_topos(),
is_isolated(),
min_dist(),
no_title(),
plot_curtain(),
plot_fish_zoom(),
plot_fst_poptree(),
plot_leg(),
plot_panel_anno(),
plot_panel_delta_dxy(),
plot_panel_dxy(),
plot_panel_fst(),
plot_panel_gxp(),
plot_panel_twisst(),
prep_data(),
theme_panels()